gnomad.variant_qc

• evaluation
  • compute_ranked_bin()
  • compute_grouped_binned_ht()
  • compute_binned_truth_sample_concordance()
  • create_truth_sample_ht()
  • add_rank()
• ld
  • get_r_human_readable()
  • get_r_for_pair_of_variants()
  • get_r_within_gene_in_pop()
  • get_r_within_gene()
• pipeline
  • create_binned_ht()
  • score_bin_agg()
  • generate_trio_stats()
  • generate_sib_stats()
  • train_rf_model()
• random_forest
  • run_rf_test()
  • check_ht_fields_for_spark()
  • get_columns_quantiles()
  • median_impute_features()
  • ht_to_rf_df()
  • get_features_importance()
  • get_labels()
  • test_model()
  • apply_rf_model()
  • save_model()
  • load_model()
  • train_rf()
  • get_rf_runs()
  • get_run_data()
  • pretty_print_runs()
• training
  • sample_training_examples()