gnomad.assessment

• parse_validity_logs
  • parse_log_file()
  • generate_html_report()
• summary_stats
  • freq_bin_expr()
  • get_summary_counts_dict()
  • get_summary_ac_dict()
  • get_summary_counts()
  • get_an_criteria()
  • get_tx_expression_expr()
  • get_summary_stats_variant_filter_expr()
  • get_summary_stats_csq_filter_expr()
  • generate_filter_combinations()
  • get_summary_stats_filter_group_meta()
  • default_generate_gene_lof_matrix()
  • get_het_hom_summary_dict()
  • default_generate_gene_lof_summary()
• validity_checks
  • custom_record_factory()
  • temp_logger()
  • generic_field_check()
  • generic_field_check_loop()
  • generate_field_check_expr()
  • make_filters_expr_dict()
  • make_group_sum_expr_dict()
  • compare_row_counts()
  • summarize_variant_filters()
  • compare_subset_freqs()
  • sum_group_callstats()
  • summarize_variants()
  • check_raw_and_adj_callstats()
  • check_sex_chr_metrics()
  • compute_missingness()
  • vcf_field_check()
  • check_global_and_row_annot_lengths()
  • pprint_global_anns()
  • validate_release_t()
  • count_vep_annotated_variants_per_interval()
  • check_missingness_of_struct()
  • flatten_missingness_struct()
  • unfurl_array_annotations()
  • check_globals_for_retired_terms()