gnomad.resources.config

Configuration for loading resources.

`gnomad.resources.config.GnomadPublicResourceSource`(value)	Sources for public gnomAD resources.
`gnomad.resources.config.get_default_public_resource_source`()	Get the default source for public gnomAD resources.

Configuration for loading resources.

class gnomad.resources.config.GnomadPublicResourceSource(value, names=None, *, module=None, qualname=None, type=None, start=1, boundary=None)[source]

Sources for public gnomAD resources.

GNOMAD = 'gnomAD'

GOOGLE_CLOUD_PUBLIC_DATASETS = 'Google Cloud Public Datasets'

REGISTRY_OF_OPEN_DATA_ON_AWS = 'Registry of Open Data on AWS'

AZURE_OPEN_DATASETS = 'Azure Open Datasets'

gnomad.resources.config.get_default_public_resource_source()[source]

Get the default source for public gnomAD resources.

The default source is determined by…

If the GNOMAD_DEFAULT_PUBLIC_RESOURCE_SOURCE environment variable is set, use the source configured there.
Otherwise, if Hail determines that is is running in a cloud provider’s Spark environment, use the source from that cloud provider. For example, use Azure Open Datasets if running on an Azure HDInsight cluster.
Otherwise, use Google Cloud Public Datasets.

Return type:: Union[GnomadPublicResourceSource, str]
Returns:: Default resource source