Package | Description |
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picard.vcf.filter |
Modifier and Type | Class and Description |
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class |
AlleleBalanceFilter
Filters out a record if the allele balance for heterozygotes is out of a defined range across all samples.
|
class |
FisherStrandFilter
Filters records based on the phred scaled p-value from the Fisher Strand test stored in
the FS attribute.
|
class |
QdFilter
Filters out sites that have a QD annotation applied to them and where the QD value is lower than a
lower limit.
|
Constructor and Description |
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FilterApplyingVariantIterator(java.util.Iterator<htsjdk.variant.variantcontext.VariantContext> iterator,
java.util.Collection<VariantFilter> filters,
java.util.Collection<GenotypeFilter> gtFilters)
Constructs an iterator from an underlying iterator and the provided (possibly empty)
collections of variant and genotype filters.
|