public class AlleleBalanceFilter extends java.lang.Object implements VariantFilter
Modifier and Type | Field and Description |
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static java.lang.String |
AB_FILTER
The filter string used for sites that fail the allele balance filter.
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Constructor and Description |
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AlleleBalanceFilter(double hetAlleleBalance) |
Modifier and Type | Method and Description |
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java.lang.String |
filter(htsjdk.variant.variantcontext.VariantContext ctx)
Check to see if the VariantContext should have a filter applied to it.
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java.util.List<htsjdk.variant.vcf.VCFFilterHeaderLine> |
headerLines()
Return VCF header lines that define filters that may be applied by the VariantFilter.
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public static final java.lang.String AB_FILTER
public java.util.List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
VariantFilter
headerLines
in interface VariantFilter
public java.lang.String filter(htsjdk.variant.variantcontext.VariantContext ctx)
VariantFilter
filter
in interface VariantFilter