Uses of Class
picard.pedigree.Sex

Packages that use Sex

Package	Description
picard.pedigree

Uses of Sex in picard.pedigree

Fields in picard.pedigree declared as Sex

Modifier and Type	Field and Description
static Sex	PedFile.UNKNOWN_SEX

Methods in picard.pedigree that return Sex

Modifier and Type	Method and Description
static Sex	Sex.fromCode(int code) Decodes the Sex from a numeric code.
Sex	PedFile.PedTrio.getSex()
static Sex	Sex.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static Sex[]	Sex.values() Returns an array containing the constants of this enum type, in the order they are declared.

Method parameters in picard.pedigree with type arguments of type Sex

Modifier and Type	Method and Description
static PedFile	PedFile.fromSexMap(java.util.Map<java.lang.String,Sex> sampleSexes) Function that accepts a map from sample-name to its sex and creates a PEDFile documenting the sexes.

Constructors in picard.pedigree with parameters of type Sex

Constructor and Description
PedTrio(java.lang.String familyId, java.lang.String individualId, java.lang.String paternalId, java.lang.String maternalId, Sex sex, java.lang.Number phenotype) Constructs a TRIO that cannot be modified after the fact.