picard.pedigree

Class PedFile.PedTrio

java.lang.Object

picard.pedigree.PedFile.PedTrio

Enclosing class:

PedFile

public class PedFile.PedTrio
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
PedTrio(java.lang.String familyId, java.lang.String individualId, java.lang.String paternalId, java.lang.String maternalId, Sex sex, java.lang.Number phenotype) Constructs a TRIO that cannot be modified after the fact.

Method Summary

Modifier and Type	Method and Description
java.lang.String	getFamilyId()
java.lang.String	getIndividualId()
java.lang.String	getMaternalId()
java.lang.String	getPaternalId()
java.lang.Number	getPhenotype()
Sex	getSex()
boolean	hasBothParents() True if this record has paternal and maternal ids, otherwise false.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PedTrio

public PedTrio(java.lang.String familyId,
               java.lang.String individualId,
               java.lang.String paternalId,
               java.lang.String maternalId,
               Sex sex,
               java.lang.Number phenotype)

Constructs a TRIO that cannot be modified after the fact.

Method Detail

hasBothParents

public boolean hasBothParents()

True if this record has paternal and maternal ids, otherwise false.

getFamilyId

public java.lang.String getFamilyId()

getIndividualId

public java.lang.String getIndividualId()

getPaternalId

public java.lang.String getPaternalId()

getMaternalId

public java.lang.String getMaternalId()

getSex

public Sex getSex()

getPhenotype

public java.lang.Number getPhenotype()