Uses of Class
picard.metrics.MultilevelMetrics

Packages that use MultilevelMetrics

Package	Description
picard.analysis
picard.analysis.directed

Uses of MultilevelMetrics in picard.analysis

Subclasses of MultilevelMetrics in picard.analysis

Modifier and Type	Class and Description
class	AlignmentSummaryMetrics High level metrics about the alignment of reads within a SAM file, produced by the CollectAlignmentSummaryMetrics program and usually stored in a file with the extension ".alignment_summary_metrics".
class	GcBiasDetailMetrics Class that holds detailed metrics about reads that fall within windows of a certain GC bin on the reference genome.
class	GcBiasSummaryMetrics High level metrics that capture how biased the coverage in a certain lane is.
class	InsertSizeMetrics Metrics about the insert size distribution of a paired-end library, created by the CollectInsertSizeMetrics program and usually written to a file with the extension ".insert_size_metrics".
class	RnaSeqMetrics Metrics about the alignment of RNA-seq reads within a SAM file to genes, produced by the CollectRnaSeqMetrics program and usually stored in a file with the extension ".rna_metrics".
class	RrbsCpgDetailMetrics Holds information about CpG sites encountered for RRBS processing QC
class	RrbsSummaryMetrics Holds summary statistics from RRBS processing QC

Uses of MultilevelMetrics in picard.analysis.directed

Classes in picard.analysis.directed with type parameters of type MultilevelMetrics

Modifier and Type	Class and Description
class	CollectTargetedMetrics<METRIC extends MultilevelMetrics,COLLECTOR extends TargetMetricsCollector<METRIC>> Both CollectTargetedPCRMetrics and CalculateHybridSelection metrics share virtually identical program structures except for the name of their targeting mechanisms (e.g.
class	TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics> TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).

Subclasses of MultilevelMetrics in picard.analysis.directed

Modifier and Type	Class and Description
class	HsMetrics Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments.
class	TargetedPcrMetrics Metrics class for targeted pcr runs such as TSCA runs