Uses of Class
picard.metrics.MultiLevelCollector

Packages that use MultiLevelCollector

Package	Description
picard.analysis
picard.analysis.directed
picard.metrics

Uses of MultiLevelCollector in picard.analysis

Subclasses of MultiLevelCollector in picard.analysis

Modifier and Type	Class and Description
class	AlignmentSummaryMetricsCollector
class	GcBiasMetricsCollector Calculates GC Bias Metrics on multiple levels Created by kbergin on 3/23/15.
class	RrbsMetricsCollector

Uses of MultiLevelCollector in picard.analysis.directed

Subclasses of MultiLevelCollector in picard.analysis.directed

Modifier and Type	Class and Description
class	HsMetricCollector Calculates HS metrics for a given SAM or BAM file.
class	InsertSizeMetricsCollector Collects InserSizeMetrics on the specified accumulationLevels using
class	RnaSeqMetricsCollector
class	TargetedPcrMetricsCollector Calculates HS metrics for a given SAM or BAM file.
class	TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics> TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).

Uses of MultiLevelCollector in picard.metrics

Subclasses of MultiLevelCollector in picard.metrics

Modifier and Type	Class and Description
class	SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends java.lang.Comparable>
class	SAMRecordMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends java.lang.Comparable> Defines a MultilevelPerRecordCollector using the argument type of SAMRecord so that this doesn't have to be redefined for each subclass of MultilevelPerRecordCollector