| Package | Description |
|---|---|
| picard.illumina |
| Class and Description |
|---|
| ClusterDataToSamConverter
Takes ClusterData provided by an IlluminaDataProvider into one or two SAMRecords,
as appropriate, and optionally marking adapter sequence.
|
| ExtractIlluminaBarcodes.BarcodeMetric
Metrics produced by the ExtractIlluminaBarcodes program that is used to parse data in
the basecalls directory and determine to which barcode each read should be assigned.
|
| IlluminaBasecallsConverter.ClusterDataConverter |
| IlluminaBasecallsConverter.ConvertedClusterDataWriter |
| IlluminaBasecallsToFastq.ReadNameFormat
Simple switch to control the read name format to emit.
|
| IlluminaPhasingMetrics
Metrics for Illumina Basecalling that stores median phasing and prephasing percentages on a per-template-read, per-lane basis.
|