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- a -
api_usage_error :
synced_bcf_reader.h
- b -
bai :
hts.h
bam :
hts.h
BAM_CBASE_MATCH :
cram_samtools.h
BAM_CBASE_MISMATCH :
cram_samtools.h
BAM_CDEL_ :
cram_samtools.h
BAM_CHARD_CLIP_ :
cram_samtools.h
BAM_CINS_ :
cram_samtools.h
BAM_CMATCH_ :
cram_samtools.h
BAM_CPAD_ :
cram_samtools.h
BAM_CREF_SKIP_ :
cram_samtools.h
BAM_CSOFT_CLIP_ :
cram_samtools.h
bcf :
hts.h
bcfv1 :
hts.h
bed :
hts.h
bgzf :
hts.h
binary_format :
hts.h
BZIP2 :
cram_structs.h
- c -
category_maximum :
hts.h
COMPRESSION_HEADER :
cram_structs.h
compression_maximum :
hts.h
CORE :
cram_structs.h
crai :
hts.h
cram :
hts.h
CRAM_ALL :
cram_structs.h
CRAM_AP :
cram_structs.h
CRAM_aux :
cram_structs.h
CRAM_BA :
cram_structs.h
CRAM_BB :
cram_structs.h
CRAM_BB_len :
cram_structs.h
CRAM_BF :
cram_structs.h
CRAM_BS :
cram_structs.h
CRAM_CF :
cram_structs.h
CRAM_DL :
cram_structs.h
CRAM_FC :
cram_structs.h
CRAM_FN :
cram_structs.h
CRAM_FP :
cram_structs.h
CRAM_HC :
cram_structs.h
CRAM_IN :
cram_structs.h
CRAM_MF :
cram_structs.h
CRAM_MQ :
cram_structs.h
CRAM_NF :
cram_structs.h
CRAM_NP :
cram_structs.h
CRAM_NS :
cram_structs.h
CRAM_OPT_DECODE_MD :
hts.h
CRAM_OPT_EMBED_REF :
hts.h
CRAM_OPT_IGNORE_MD5 :
hts.h
CRAM_OPT_MULTI_SEQ_PER_SLICE :
hts.h
CRAM_OPT_NO_REF :
hts.h
CRAM_OPT_NTHREADS :
hts.h
CRAM_OPT_PREFIX :
hts.h
CRAM_OPT_RANGE :
hts.h
CRAM_OPT_REFERENCE :
hts.h
CRAM_OPT_REQUIRED_FIELDS :
hts.h
CRAM_OPT_SEQS_PER_SLICE :
hts.h
CRAM_OPT_SHARED_REF :
hts.h
CRAM_OPT_SLICES_PER_CONTAINER :
hts.h
CRAM_OPT_THREAD_POOL :
hts.h
CRAM_OPT_USE_BZIP2 :
hts.h
CRAM_OPT_USE_LZMA :
hts.h
CRAM_OPT_USE_RANS :
hts.h
CRAM_OPT_VERBOSITY :
hts.h
CRAM_OPT_VERSION :
hts.h
CRAM_PD :
cram_structs.h
CRAM_QQ :
cram_structs.h
CRAM_QQ_len :
cram_structs.h
CRAM_QS :
cram_structs.h
CRAM_RG :
cram_structs.h
CRAM_RI :
cram_structs.h
CRAM_RL :
cram_structs.h
CRAM_RN :
cram_structs.h
CRAM_RS :
cram_structs.h
CRAM_SC :
cram_structs.h
CRAM_TL :
cram_structs.h
CRAM_TS :
cram_structs.h
csi :
hts.h
CT_ERROR :
cram_structs.h
custom :
hts.h
- d -
DS_AP :
cram_structs.h
DS_aux :
cram_structs.h
DS_aux_BD :
cram_structs.h
DS_aux_BI :
cram_structs.h
DS_aux_BQ :
cram_structs.h
DS_aux_FZ :
cram_structs.h
DS_aux_OQ :
cram_structs.h
DS_aux_oq :
cram_structs.h
DS_aux_os :
cram_structs.h
DS_aux_oz :
cram_structs.h
DS_BA :
cram_structs.h
DS_BB :
cram_structs.h
DS_BB_len :
cram_structs.h
DS_BF :
cram_structs.h
DS_BS :
cram_structs.h
DS_CF :
cram_structs.h
DS_CORE :
cram_structs.h
DS_DL :
cram_structs.h
DS_END :
cram_structs.h
DS_FC :
cram_structs.h
DS_FN :
cram_structs.h
DS_FP :
cram_structs.h
DS_HC :
cram_structs.h
DS_IN :
cram_structs.h
DS_MF :
cram_structs.h
DS_MQ :
cram_structs.h
DS_NF :
cram_structs.h
DS_NP :
cram_structs.h
DS_NS :
cram_structs.h
DS_PD :
cram_structs.h
DS_QQ :
cram_structs.h
DS_QQ_len :
cram_structs.h
DS_QS :
cram_structs.h
DS_ref :
cram_structs.h
DS_RG :
cram_structs.h
DS_RI :
cram_structs.h
DS_RL :
cram_structs.h
DS_RN :
cram_structs.h
DS_RN_len :
cram_structs.h
DS_RS :
cram_structs.h
DS_SC :
cram_structs.h
DS_SC_len :
cram_structs.h
DS_TC :
cram_structs.h
DS_TL :
cram_structs.h
DS_TM :
cram_structs.h
DS_TN :
cram_structs.h
DS_TS :
cram_structs.h
DS_TV :
cram_structs.h
- e -
E_BETA :
cram_structs.h
E_BYTE :
cram_structs.h
E_BYTE_ARRAY :
cram_structs.h
E_BYTE_ARRAY_BLOCK :
cram_structs.h
E_BYTE_ARRAY_LEN :
cram_structs.h
E_BYTE_ARRAY_STOP :
cram_structs.h
E_EXTERNAL :
cram_structs.h
E_GAMMA :
cram_structs.h
E_GOLOMB :
cram_structs.h
E_GOLOMB_RICE :
cram_structs.h
E_HUFFMAN :
cram_structs.h
E_INT :
cram_structs.h
E_LONG :
cram_structs.h
E_NULL :
cram_structs.h
E_SUBEXP :
cram_structs.h
ERROR :
cram_structs.h
EXTERNAL :
cram_structs.h
- f -
FILE_HEADER :
cram_structs.h
file_type_error :
synced_bcf_reader.h
format_maximum :
hts.h
- g -
gzi :
hts.h
GZIP :
cram_structs.h
gzip :
hts.h
GZIP_RLE :
cram_structs.h
- h -
header_error :
synced_bcf_reader.h
- i -
identify :
htsfile.c
idx_load_failed :
synced_bcf_reader.h
index_file :
hts.h
- l -
LZMA :
cram_structs.h
- m -
MAPPED_SLICE :
cram_structs.h
- n -
no_compression :
hts.h
not_bgzf :
synced_bcf_reader.h
- o -
open_failed :
synced_bcf_reader.h
- r -
RANS :
cram_structs.h
RANS0 :
cram_structs.h
RANS1 :
cram_structs.h
RAW :
cram_structs.h
region_list :
hts.h
- s -
sam :
hts.h
SAM_AUX :
hts.h
SAM_CIGAR :
hts.h
SAM_FLAG :
hts.h
SAM_MAPQ :
hts.h
SAM_PNEXT :
hts.h
SAM_POS :
hts.h
SAM_QNAME :
hts.h
SAM_QUAL :
hts.h
SAM_RGAUX :
hts.h
SAM_RNAME :
hts.h
SAM_RNEXT :
hts.h
SAM_SEQ :
hts.h
SAM_TLEN :
hts.h
sequence_data :
hts.h
- t -
tbi :
hts.h
text_format :
hts.h
- u -
unknown_category :
hts.h
unknown_format :
hts.h
UNMAPPED_SLICE :
cram_structs.h
- v -
variant_data :
hts.h
vcf :
hts.h
view_all :
htsfile.c
view_headers :
htsfile.c
Generated on Wed May 13 2015 23:12:13 for Gamgee by
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