gamgee::SamBuilder Member List

This is the complete list of members for gamgee::SamBuilder, including all inherited members.

build() const	gamgee::SamBuilder
one_time_build()	gamgee::SamBuilder
operator=(SamBuilder &&other)=default	gamgee::SamBuilder
operator=(const SamBuilder &other)=delete	gamgee::SamBuilder
SamBuilder(const SamHeader &header, const bool validate_on_build=true)	gamgee::SamBuilder	explicit
SamBuilder(const Sam &starting_read, const bool validate_on_build=true)	gamgee::SamBuilder	explicit
SamBuilder(const SamHeader &header, const Sam &starting_read, const bool validate_on_build=true)	gamgee::SamBuilder	explicit
SamBuilder(SamBuilder &&other)=default	gamgee::SamBuilder
SamBuilder(const SamBuilder &other)=delete	gamgee::SamBuilder
set_alignment_start(const uint32_t start)	gamgee::SamBuilder	inline
set_base_quals(const BaseQuals &new_base_quals)	gamgee::SamBuilder
set_base_quals(const std::vector< uint8_t > &new_base_quals)	gamgee::SamBuilder
set_base_quals(const std::initializer_list< uint8_t > new_base_quals)	gamgee::SamBuilder
set_base_quals(const std::initializer_list< int > new_base_quals)	gamgee::SamBuilder
set_bases(const ReadBases &new_bases)	gamgee::SamBuilder
set_bases(const std::vector< Base > &new_bases)	gamgee::SamBuilder
set_bases(const std::initializer_list< Base > new_bases)	gamgee::SamBuilder
set_bases(const std::string &new_bases)	gamgee::SamBuilder
set_chromosome(const uint32_t chr)	gamgee::SamBuilder	inline
set_cigar(const Cigar &new_cigar)	gamgee::SamBuilder
set_cigar(const std::vector< CigarElement > &new_cigar)	gamgee::SamBuilder
set_cigar(const std::initializer_list< CigarElement > new_cigar)	gamgee::SamBuilder
set_cigar(const std::string &new_cigar)	gamgee::SamBuilder
set_duplicate()	gamgee::SamBuilder	inline
set_fail()	gamgee::SamBuilder	inline
set_first()	gamgee::SamBuilder	inline
set_last()	gamgee::SamBuilder	inline
set_mate_alignment_start(const uint32_t mstart)	gamgee::SamBuilder	inline
set_mate_chromosome(const uint32_t mchr)	gamgee::SamBuilder	inline
set_mate_reverse()	gamgee::SamBuilder	inline
set_mate_unmapped()	gamgee::SamBuilder	inline
set_name(const std::string &new_name)	gamgee::SamBuilder
set_not_duplicate()	gamgee::SamBuilder	inline
set_not_fail()	gamgee::SamBuilder	inline
set_not_first()	gamgee::SamBuilder	inline
set_not_last()	gamgee::SamBuilder	inline
set_not_mate_reverse()	gamgee::SamBuilder	inline
set_not_mate_unmapped()	gamgee::SamBuilder	inline
set_not_paired()	gamgee::SamBuilder	inline
set_not_reverse()	gamgee::SamBuilder	inline
set_not_secondary()	gamgee::SamBuilder	inline
set_not_supplementary()	gamgee::SamBuilder	inline
set_not_unmapped()	gamgee::SamBuilder	inline
set_paired()	gamgee::SamBuilder	inline
set_reverse()	gamgee::SamBuilder	inline
set_secondary()	gamgee::SamBuilder	inline
set_supplementary()	gamgee::SamBuilder	inline
set_unmapped()	gamgee::SamBuilder	inline
~SamBuilder()=default	gamgee::SamBuilder