This is the complete list of members for gamgee::Sam, including all inherited members.

alignment_start() const	gamgee::Sam	inline
alignment_stop() const	gamgee::Sam	inline
base_quals() const	gamgee::Sam	inline
bases() const	gamgee::Sam	inline
char_tag(const std::string &tag_name) const	gamgee::Sam
chromosome() const	gamgee::Sam	inline
cigar() const	gamgee::Sam	inline
double_tag(const std::string &tag_name) const	gamgee::Sam
duplicate() const	gamgee::Sam	inline
empty() const	gamgee::Sam	inline
fail() const	gamgee::Sam	inline
first() const	gamgee::Sam	inline
header()	gamgee::Sam	inline
insert_size() const	gamgee::Sam	inline
integer_tag(const std::string &tag_name) const	gamgee::Sam
last() const	gamgee::Sam	inline
mapping_qual() const	gamgee::Sam	inline
mate_alignment_start() const	gamgee::Sam	inline
mate_alignment_stop() const	gamgee::Sam
mate_alignment_stop(const SamTag< std::string > &mate_cigar_tag) const	gamgee::Sam
mate_chromosome() const	gamgee::Sam	inline
mate_reverse() const	gamgee::Sam	inline
mate_unclipped_start() const	gamgee::Sam
mate_unclipped_start(const SamTag< std::string > &mate_cigar_tag) const	gamgee::Sam
mate_unclipped_stop() const	gamgee::Sam
mate_unclipped_stop(const SamTag< std::string > &mate_cigar_tag) const	gamgee::Sam
mate_unmapped() const	gamgee::Sam	inline
name() const	gamgee::Sam	inline
operator=(const Sam &other)	gamgee::Sam
operator=(Sam &&other)=default	gamgee::Sam
paired() const	gamgee::Sam	inline
properly_paired() const	gamgee::Sam	inline
reverse() const	gamgee::Sam	inline
Sam()=default	gamgee::Sam
Sam(const std::shared_ptr< bam_hdr_t > &header, const std::shared_ptr< bam1_t > &body) noexcept	gamgee::Sam	explicit
Sam(const Sam &other)	gamgee::Sam
Sam(Sam &&other)=default	gamgee::Sam
SamBuilder class	gamgee::Sam	friend
SamWriter class	gamgee::Sam	friend
secondary() const	gamgee::Sam	inline
set_alignment_start(const uint32_t start)	gamgee::Sam	inline
set_chromosome(const uint32_t chr)	gamgee::Sam	inline
set_duplicate()	gamgee::Sam	inline
set_fail()	gamgee::Sam	inline
set_first()	gamgee::Sam	inline
set_insert_size(const int32_t isize)	gamgee::Sam	inline
set_last()	gamgee::Sam	inline
set_mapping_qual(const uint8_t mapq)	gamgee::Sam	inline
set_mate_alignment_start(const uint32_t mstart)	gamgee::Sam	inline
set_mate_chromosome(const uint32_t mchr)	gamgee::Sam	inline
set_mate_reverse()	gamgee::Sam	inline
set_mate_unmapped()	gamgee::Sam	inline
set_not_duplicate()	gamgee::Sam	inline
set_not_fail()	gamgee::Sam	inline
set_not_first()	gamgee::Sam	inline
set_not_last()	gamgee::Sam	inline
set_not_mate_reverse()	gamgee::Sam	inline
set_not_mate_unmapped()	gamgee::Sam	inline
set_not_paired()	gamgee::Sam	inline
set_not_reverse()	gamgee::Sam	inline
set_not_secondary()	gamgee::Sam	inline
set_not_supplementary()	gamgee::Sam	inline
set_not_unmapped()	gamgee::Sam	inline
set_paired()	gamgee::Sam	inline
set_reverse()	gamgee::Sam	inline
set_secondary()	gamgee::Sam	inline
set_supplementary()	gamgee::Sam	inline
set_unmapped()	gamgee::Sam	inline
string_tag(const std::string &tag_name) const	gamgee::Sam
supplementary() const	gamgee::Sam	inline
unclipped_start() const	gamgee::Sam
unclipped_stop() const	gamgee::Sam
unmapped() const	gamgee::Sam	inline