Gamgee
You miserable little maggot. I'll stove your head in!
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gamgee::Genotype Member List

This is the complete list of members for gamgee::Genotype, including all inherited members.

allele_key(const uint32_t index) const gamgee::Genotype
allele_keys() const gamgee::Genotype
allele_string(const uint32_t index) const gamgee::Genotype
allele_strings() const gamgee::Genotype
biallelic() const gamgee::Genotype
complex() const gamgee::Genotypeinline
deletion(const AlleleMask &mask) const gamgee::Genotype
encode_genotype(std::vector< int32_t > &alleles)gamgee::Genotypeinlinestatic
encode_genotype(std::vector< int32_t > &alleles, bool phase_all_alleles)gamgee::Genotypeinlinestatic
encode_genotypes(std::vector< std::vector< int32_t >> &multiple_genotypes)gamgee::Genotypeinlinestatic
encode_genotypes(VariantBuilderMultiSampleVector< int32_t > &multiple_genotypes)gamgee::Genotypeinlinestatic
fast_diploid_key_generation() const gamgee::Genotype
Genotype(const std::shared_ptr< bcf1_t > &body, const bcf_fmt_t *const format_ptr, const uint8_t *data_ptr)gamgee::Genotype
Genotype(const Genotype &other)=deletegamgee::Genotype
Genotype(Genotype &&other)=defaultgamgee::Genotype
het() const gamgee::Genotype
hom_ref() const gamgee::Genotype
hom_var() const gamgee::Genotype
indel(const AlleleMask &mask) const gamgee::Genotype
insertion(const AlleleMask &mask) const gamgee::Genotype
missing() const gamgee::Genotype
mixed() const gamgee::Genotype
non_ref_het() const gamgee::Genotype
operator!=(const Genotype &other) const gamgee::Genotype
operator=(const Genotype &other)=deletegamgee::Genotype
operator=(Genotype &&other)=defaultgamgee::Genotype
operator==(const Genotype &other) const gamgee::Genotype
operator[](const uint32_t index) const gamgee::Genotype
size() const gamgee::Genotype
snp(const AlleleMask &mask) const gamgee::Genotype
variant() const gamgee::Genotypeinline
~Genotype()=defaultgamgee::Genotype