picard.sam

Class CreateSequenceDictionary.CreateSeqDictReferenceArgumentCollection

java.lang.Object

picard.sam.CreateSequenceDictionary.CreateSeqDictReferenceArgumentCollection

All Implemented Interfaces:

ReferenceArgumentCollection

Enclosing class:

CreateSequenceDictionary

public static class CreateSequenceDictionary.CreateSeqDictReferenceArgumentCollection
extends java.lang.Object
implements ReferenceArgumentCollection

Field Summary

Fields

Modifier and Type	Field and Description
java.io.File	REFERENCE

Constructor Summary

Constructors

Constructor and Description
CreateSeqDictReferenceArgumentCollection()

Method Summary

Modifier and Type	Method and Description
java.io.File	getReferenceFile()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REFERENCE

@Argument(doc="Input reference fasta or fasta.gz",
          shortName="R")
public java.io.File REFERENCE

Constructor Detail

CreateSeqDictReferenceArgumentCollection

public CreateSeqDictReferenceArgumentCollection()

Method Detail

getReferenceFile

public java.io.File getReferenceFile()

Specified by:

getReferenceFile in interface ReferenceArgumentCollection

Returns:

The reference provided by the user, if any, or the default, if any.