| Interface | Description |
|---|---|
| CommandLineProgramGroup |
Interface for groups of CommandLinePrograms.
|
| Class | Description |
|---|---|
| ClassFinder |
Utility class that can scan for classes in the classpath and find all the ones
annotated with a particular annotation.
|
| CommandLineDefaults |
Embodies defaults for global values that affect how the Picard Command Line operates.
|
| CommandLineProgram |
Abstract class to facilitate writing command-line programs.
|
| CommandLineSyntaxTranslater |
Class for handling translation of Picard-style command line argument syntax to POSIX-style argument syntax;
used for running tests written with Picard style syntax against the Barclay command line parser.
|
| PicardCommandLine |
This is the main class of Picard and is the way of executing individual command line programs.
|
| StandardOptionDefinitions |
A set of String constants in which the name of the constant (minus the _SHORT_NAME suffix)
is the standard long Option name, and the value of the constant is the standard shortName.
|