gnomad_qc.v5.annotations

• annotation_utils
  • Module Functions
• batch_fanout
  • Module Functions
• compute_coverage
  • Named Arguments
  • environment configuration
  • batch configuration
  • Test mode
  • Get gnomAD genomes group membership HT.
  • Compute coverage release stats HT.
  • Compute AN release stats HT.
  • Hail Batch fan-out for ``–compute-all-cov-release-stats-ht``.
  • Per-chunk worker entry-points for –use-batch-fanout (set by the orchestrator; not for direct use unless debugging a single chunk).
  • Module Functions
• generate_frequency
  • Processing Workflow:
  • Usage Examples:
• generate_variant_qc_annotations
  • Named Arguments
  • Split info HT workflow
  • Chunk processing parameters
  • Scout target loci by allele count
  • Variant QC annotation HT parameters.
  • Export true positive VCFs
  • Module Functions