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Image Dependencies

Docker Images List​

The table below lists the GATK-SV Docker images and their dependencies.

ImageCode DependenciesDocker Dependencies
manta
  • dockerfiles/manta/*
melt
  • dockerfiles/melt/*
  • sv-base
scramble
  • dockerfiles/scramble/*
wham
  • dockerfiles/wham/*
  • samtools-cloud
str
  • dockerfiles/str/*
sv-base-mini
  • dockerfiles/sv-base-mini/*
samtools-cloud-virtual-env
  • dockerfiles/samtools-cloud-virtual-env/*
samtools-cloud
  • dockerfiles/samtools-cloud/*
  • sv-base-mini
  • samtools-cloud-virtual-env
sv-base-virtual-env
  • dockerfiles/sv-base-virtual-env/*
sv-base
  • dockerfiles/sv-base/*
  • samtools-cloud
  • sv-base-virtual-env
cnmops-virtual-env
  • dockerfiles/cnmops-virtual-env/*
  • sv-base-virtual-env
cnmops
  • dockerfiles/cnmops/*
  • sv-base
  • cnmops-virtual-env
sv-pipeline-virtual-env
  • dockerfiles/sv-pipeline-virtual-env/*
  • sv-base-mini
  • sv-base-virtual-env
  • samtools-cloud-virtual-env
sv-pipeline
  • dockerfiles/sv-pipeline/*
  • src/RdTest/*
  • src/sv-pipeline/*
  • src/svqc/*
  • src/svtest/*
  • src/svtk/*
  • src/WGD/*
  • sv-base
  • sv-pipeline-virtual-env
sv-utils-env
  • dockerfiles/sv-utils-env/*
  • samtools-cloud-virtual-env
sv-utils
  • dockerfiles/sv-utils/*
  • src/sv_utils/src/*
  • src/sv_utils/setup.py
  • samtools-cloud
  • sv-utils-env