Landscape View Xenium¶

In [2]:

# %load_ext autoreload
# %autoreload 2
# %env ANYWIDGET_HMR=1

# %load_ext autoreload # %autoreload 2 # %env ANYWIDGET_HMR=1

In [3]:

import celldega as dega
dega.__version__

import celldega as dega dega.__version__

Out[3]:

'0.0.0'

In [6]:

from observable_jupyter import embed

from observable_jupyter import embed

In [11]:

base_url = 'https://raw.githubusercontent.com/broadinstitute/celldega_Xenium_Prime_Mouse_Brain_Coronal_FF_outs/main/Xenium_Prime_Mouse_Brain_Coronal_FF_outs'

base_url = 'https://raw.githubusercontent.com/broadinstitute/celldega_Xenium_Prime_Mouse_Brain_Coronal_FF_outs/main/Xenium_Prime_Mouse_Brain_Coronal_FF_outs'

In [14]:

embed('@cornhundred/celldega-landscape-ist', inputs={'base_url': base_url}, cells=['landscape_container'], display_logo=False)

embed('@cornhundred/celldega-landscape-ist', inputs={'base_url': base_url}, cells=['landscape_container'], display_logo=False)

In [13]:

# base_url = 'https://raw.githubusercontent.com/broadinstitute/celldega_Xenium_Prime_Human_Skin_FFPE_outs/main/Xenium_Prime_Human_Skin_FFPE_outs'

# landscape_ist = dega.viz.Landscape(
#     technology='Xenium',
#     ini_zoom = -4.5,
#     ini_x=6000,
#     ini_y=8000,
#     base_url = base_url,

# )

# landscape_ist

# base_url = 'https://raw.githubusercontent.com/broadinstitute/celldega_Xenium_Prime_Human_Skin_FFPE_outs/main/Xenium_Prime_Human_Skin_FFPE_outs' # landscape_ist = dega.viz.Landscape( # technology='Xenium', # ini_zoom = -4.5, # ini_x=6000, # ini_y=8000, # base_url = base_url, # ) # landscape_ist

In [ ]: