Uses of Interface
picard.vcf.filter.GenotypeFilter

Packages that use GenotypeFilter

Package	Description
picard.vcf.filter

Uses of GenotypeFilter in picard.vcf.filter

Classes in picard.vcf.filter that implement GenotypeFilter

Modifier and Type	Class and Description
class	DepthFilter Filters out a record if all variant samples have depth lower than the given value.
class	GenotypeQualityFilter Genotype filter that filters out genotypes below a given quality threshold.

Constructor parameters in picard.vcf.filter with type arguments of type GenotypeFilter

Constructor and Description
FilterApplyingVariantIterator(java.util.Iterator<htsjdk.variant.variantcontext.VariantContext> iterator, java.util.Collection<VariantFilter> filters, java.util.Collection<GenotypeFilter> gtFilters) Constructs an iterator from an underlying iterator and the provided (possibly empty) collections of variant and genotype filters.