Uses of Class
picard.vcf.GenotypeConcordanceDetailMetrics

Packages that use GenotypeConcordanceDetailMetrics

Package	Description
picard.vcf

Uses of GenotypeConcordanceDetailMetrics in picard.vcf

Method parameters in picard.vcf with type arguments of type GenotypeConcordanceDetailMetrics

Modifier and Type

Method and Description

static void

GenotypeConcordance.outputDetailMetricsFile(htsjdk.variant.variantcontext.VariantContext.Type variantType, htsjdk.samtools.metrics.MetricsFile<GenotypeConcordanceDetailMetrics,?> genotypeConcordanceDetailMetricsFile, GenotypeConcordanceCounts counter, java.lang.String truthSampleName, java.lang.String callSampleName, boolean missingSitesHomRef, boolean outputAllRows) Outputs the detailed statistics tables for SNP and Indel match categories.