Uses of Class
picard.sam.util.PhysicalLocationShort

Packages that use PhysicalLocationShort

Package	Description
picard.sam.markduplicates.util

Uses of PhysicalLocationShort in picard.sam.markduplicates.util

Subclasses of PhysicalLocationShort in picard.sam.markduplicates.util

Modifier and Type	Class and Description
class	PhysicalLocationForMateCigar Stores the minimal information needed for optical duplicate detection.
class	ReadEnds Little struct-like class to hold read pair (and fragment) end data for duplicate marking.
class	ReadEndsForMarkDuplicates Little struct-like class to hold read pair (and fragment) end data for MarkDuplicatesWithMateCigar
class	ReadEndsForMarkDuplicatesWithBarcodes
class	ReadEndsForMateCigar A class to store individual records for MarkDuplicatesWithMateCigar.