Uses of Class
picard.sam.util.PhysicalLocationInt

Packages that use PhysicalLocationInt

Package	Description
picard.sam.markduplicates.util
picard.sam.util

Uses of PhysicalLocationInt in picard.sam.markduplicates.util

Subclasses of PhysicalLocationInt in picard.sam.markduplicates.util

Modifier and Type	Class and Description
class	PhysicalLocationForMateCigar Stores the minimal information needed for optical duplicate detection.
class	ReadEnds Little struct-like class to hold read pair (and fragment) end data for duplicate marking.
class	ReadEndsForMarkDuplicates Little struct-like class to hold read pair (and fragment) end data for MarkDuplicatesWithMateCigar
class	ReadEndsForMarkDuplicatesWithBarcodes
class	ReadEndsForMateCigar A class to store individual records for MarkDuplicatesWithMateCigar.

Uses of PhysicalLocationInt in picard.sam.util

Subclasses of PhysicalLocationInt in picard.sam.util

Modifier and Type	Class and Description
class	PhysicalLocationShort Small class that provides access to the physical location information about a cluster.