| Package | Description |
|---|---|
| picard.pedigree |
| Modifier and Type | Method and Description |
|---|---|
static PedFile |
PedFile.fromFile(java.io.File file,
boolean isTabMode)
Attempts to read a pedigree file into memory.
|
static PedFile |
PedFile.fromSexMap(java.util.Map<java.lang.String,Sex> sampleSexes)
Function that accepts a map from sample-name to its sex and creates a PEDFile documenting the sexes.
|
PedFile |
PedFile.removeIncompleteTrios()
Scans through the pedigrees and removes all entries that do not have both paternal and maternal ids set.
|