Uses of Package
picard.illumina.parser.readers

Packages that use picard.illumina.parser.readers

Package	Description
picard.illumina
picard.illumina.parser
picard.illumina.parser.readers

Classes in picard.illumina.parser.readers used by picard.illumina

Class and Description
BclQualityEvaluationStrategy Describes a mechanism for revising and evaluating qualities read from a BCL file.

Classes in picard.illumina.parser.readers used by picard.illumina.parser

Class and Description
BclQualityEvaluationStrategy Describes a mechanism for revising and evaluating qualities read from a BCL file.

Classes in picard.illumina.parser.readers used by picard.illumina.parser.readers

Class and Description
AbstractIlluminaPositionFileReader The position files of Illumina are nearly the same form: Pos files consist of text based tabbed x-y coordinate float pairs, locs files are binary x-y float pairs, clocs are compressed binary x-y float pairs.
AbstractIlluminaPositionFileReader.PositionInfo
BclQualityEvaluationStrategy Describes a mechanism for revising and evaluating qualities read from a BCL file.
BclReader BCL Files are base call and quality score binary files containing a (base,quality) pair for successive clusters.
TileMetricsOutReader.IlluminaLaneTileCode Helper class which captures the combination of a lane, tile & metric code
TileMetricsOutReader.IlluminaTileMetrics IlluminaPhasingMetrics corresponds to a single record in a TileMetricsOut file