| Package | Description |
|---|---|
| picard.illumina.parser |
| Modifier and Type | Method and Description |
|---|---|
static java.util.Map<IlluminaFileUtil.SupportedIlluminaFormat,java.util.Set<IlluminaDataType>> |
IlluminaDataProviderFactory.determineFormats(java.util.Set<IlluminaDataType> requestedDataTypes,
IlluminaFileUtil fileUtil)
For all requestedDataTypes return a map of file format to set of provided data types that covers as many requestedDataTypes as possible and
chooses the most preferred available formats possible
|
static IlluminaFileUtil.SupportedIlluminaFormat |
IlluminaDataProviderFactory.findPreferredFormat(IlluminaDataType dt,
IlluminaFileUtil fileUtil)
Given a data type find the most preferred file format even if files are not available
|