Package | Description |
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picard.illumina.parser |
Modifier and Type | Method and Description |
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static java.util.Map<IlluminaFileUtil.SupportedIlluminaFormat,java.util.Set<IlluminaDataType>> |
IlluminaDataProviderFactory.determineFormats(java.util.Set<IlluminaDataType> requestedDataTypes,
IlluminaFileUtil fileUtil)
For all requestedDataTypes return a map of file format to set of provided data types that covers as many requestedDataTypes as possible and
chooses the most preferred available formats possible
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static IlluminaFileUtil.SupportedIlluminaFormat |
IlluminaDataProviderFactory.findPreferredFormat(IlluminaDataType dt,
IlluminaFileUtil fileUtil)
Given a data type find the most preferred file format even if files are not available
|