Uses of Class
picard.illumina.parser.ClusterData

Packages that use ClusterData

Package	Description
picard.fastq
picard.illumina
picard.illumina.parser

Uses of ClusterData in picard.fastq

Methods in picard.fastq with parameters of type ClusterData

Modifier and Type	Method and Description
java.lang.String	Casava18ReadNameEncoder.generateReadName(ClusterData cluster, java.lang.Integer pairNumber)
java.lang.String	IlluminaReadNameEncoder.generateReadName(ClusterData cluster, java.lang.Integer pairNumber)
java.lang.String	ReadNameEncoder.generateReadName(ClusterData cluster, java.lang.Integer pairNumber) Generates a read name string for the provided cluster.

Uses of ClusterData in picard.illumina

Methods in picard.illumina with parameters of type ClusterData

Modifier and Type	Method and Description
picard.illumina.IlluminaBasecallsToSam.SAMRecordsForCluster	ClusterDataToSamConverter.convertClusterToOutputRecord(ClusterData cluster) Creates the SAMRecord for each read in the cluster
OUTPUT_RECORD	IlluminaBasecallsConverter.ClusterDataConverter.convertClusterToOutputRecord(ClusterData cluster) Creates the OUTPUT_RECORDs from the cluster

Uses of ClusterData in picard.illumina.parser

Methods in picard.illumina.parser that return ClusterData

Modifier and Type	Method and Description
ClusterData	IlluminaDataProvider.next()

Methods in picard.illumina.parser that return types with arguments of type ClusterData

Modifier and Type	Method and Description
java.util.Iterator<ClusterData>	IlluminaDataProvider.iterator()