public class PosParser extends PerTileParser<picard.illumina.parser.PositionalData>
Constructor and Description |
---|
PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles,
IlluminaFileUtil.SupportedIlluminaFormat fileType) |
PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles,
int startingTile,
IlluminaFileUtil.SupportedIlluminaFormat fileType) |
Modifier and Type | Method and Description |
---|---|
protected htsjdk.samtools.util.CloseableIterator<picard.illumina.parser.PositionalData> |
makeTileIterator(java.io.File file)
Make an CloseableIterator
|
java.util.Set<IlluminaDataType> |
supportedTypes() |
close, getTileOfNextCluster, hasNext, maybeAdvance, next, remove, seekToTile, verifyData
public PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles, IlluminaFileUtil.SupportedIlluminaFormat fileType)
public PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles, int startingTile, IlluminaFileUtil.SupportedIlluminaFormat fileType)
protected htsjdk.samtools.util.CloseableIterator<picard.illumina.parser.PositionalData> makeTileIterator(java.io.File file)
makeTileIterator
in class PerTileParser<picard.illumina.parser.PositionalData>
file
- A file for the current tile being parsedpublic java.util.Set<IlluminaDataType> supportedTypes()