Uses of Class
picard.fingerprint.DiploidGenotype

Packages that use DiploidGenotype

Package	Description
picard.fingerprint

Uses of DiploidGenotype in picard.fingerprint

Methods in picard.fingerprint that return DiploidGenotype

Modifier and Type	Method and Description
static DiploidGenotype	DiploidGenotype.fromBases(byte[] bases) Converts a pair of bases into a DiploidGenotype regardless of base order or case
static DiploidGenotype	DiploidGenotype.fromBases(byte base1, byte base2) Converts a pair of bases into a DiploidGenotype regardless of base order or case
DiploidGenotype	Snp.getHeterogyzousGenotype()
DiploidGenotype	Snp.getHomozygousAllele1Genotype()
DiploidGenotype	Snp.getHomozygousAllele2Genotype()
DiploidGenotype	HaplotypeProbabilities.getMostLikelyGenotype(Snp snp) Gets the genotype for this Snp given the most likely haplotype.
DiploidGenotype	HaplotypeBlock.getSnpGenotype(Snp snp, DiploidHaplotype haplotype) Gets the expected genotype of the provided SNP given the provided haplotype of this haplotype block.
static DiploidGenotype	DiploidGenotype.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static DiploidGenotype[]	DiploidGenotype.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in picard.fingerprint with parameters of type DiploidGenotype

Modifier and Type	Method and Description
DiploidHaplotype	HaplotypeBlock.getDiploidHaplotype(Snp snp, DiploidGenotype gt) Gets the diploid haplotype for this haplotype block given the provided SNP and SNP genotype.