Uses of Class
picard.analysis.directed.RnaSeqMetricsCollector.StrandSpecificity

Packages that use RnaSeqMetricsCollector.StrandSpecificity

Package	Description
picard.analysis
picard.analysis.directed

Uses of RnaSeqMetricsCollector.StrandSpecificity in picard.analysis

Fields in picard.analysis declared as RnaSeqMetricsCollector.StrandSpecificity

Modifier and Type	Field and Description
RnaSeqMetricsCollector.StrandSpecificity	CollectRnaSeqMetrics.STRAND_SPECIFICITY

Uses of RnaSeqMetricsCollector.StrandSpecificity in picard.analysis.directed

Methods in picard.analysis.directed that return RnaSeqMetricsCollector.StrandSpecificity

Modifier and Type	Method and Description
static RnaSeqMetricsCollector.StrandSpecificity	RnaSeqMetricsCollector.StrandSpecificity.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static RnaSeqMetricsCollector.StrandSpecificity[]	RnaSeqMetricsCollector.StrandSpecificity.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in picard.analysis.directed with parameters of type RnaSeqMetricsCollector.StrandSpecificity

Constructor and Description

RnaSeqMetricsCollector(java.util.Set<MetricAccumulationLevel> accumulationLevels, java.util.List<htsjdk.samtools.SAMReadGroupRecord> samRgRecords, java.lang.Long ribosomalBasesInitialValue, htsjdk.samtools.util.OverlapDetector<Gene> geneOverlapDetector, htsjdk.samtools.util.OverlapDetector<htsjdk.samtools.util.Interval> ribosomalSequenceOverlapDetector, java.util.HashSet<java.lang.Integer> ignoredSequenceIndices, int minimumLength, RnaSeqMetricsCollector.StrandSpecificity strandSpecificity, double rrnaFragmentPercentage, boolean collectCoverageStatistics)