regidx.c File Reference

#include "htslib/hts.h"
#include "htslib/kstring.h"
#include "htslib/kseq.h"
#include "htslib/khash_str2int.h"
#include "htslib/regidx.h"

Classes
struct	reglist_t
struct	_regidx_t

Macros
#define	LIDX_SHIFT   13

Functions
char **	regidx_seq_names (regidx_t *idx, int *n)
int	_regidx_build_index (regidx_t *idx)
int	regidx_insert (regidx_t *idx, char *line)
regidx_t *	regidx_init (const char *fname, regidx_parse_f parser, regidx_free_f free_f, size_t payload_size, void *usr_dat)
void	regidx_destroy (regidx_t *idx)
int	regidx_overlap (regidx_t *idx, char *chr, uint32_t from, uint32_t to, regitr_t *itr)
int	regidx_parse_bed (const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, void *usr)
int	regidx_parse_tab (const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, void *usr)

Macro Definition Documentation

#define LIDX_SHIFT   13

Function Documentation

int _regidx_build_index

(

regidx_t *

idx

)

void regidx_destroy

(

regidx_t *

idx

)

regidx_t* regidx_init	(	const char *	fname,
		regidx_parse_f	parser,
		regidx_free_f	free_f,
		size_t	payload_size,
		void *	usr_dat
	)

int regidx_insert	(	regidx_t *	idx,
		char *	line
	)

int regidx_overlap	(	regidx_t *	idx,
		char *	chr,
		uint32_t	from,
		uint32_t	to,
		regitr_t *	itr
	)

int regidx_parse_bed	(	const char *	line,
		char **	chr_beg,
		char **	chr_end,
		reg_t *	reg,
		void *	payload,
		void *	usr
	)

int regidx_parse_tab	(	const char *	line,
		char **	chr_beg,
		char **	chr_end,
		reg_t *	reg,
		void *	payload,
		void *	usr
	)

char** regidx_seq_names	(	regidx_t *	idx,
		int *	n
	)