merged_vcf_lut.h File Reference

#include <assert.h>
#include <vector>
#include "htslib/vcf.h"
#include "../missing.h"
#include "../variant/variant_header.h"

Go to the source code of this file.

Classes
class	gamgee::VariantHeaderMerger< fields_forward_LUT_ordering, fields_reverse_LUT_ordering, samples_forward_LUT_ordering, samples_reverse_LUT_ordering >
class	gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
	Base class to store look up information between fields of merged header and input headers. More...
class	gamgee::utils::MergedVCFAllelesIdxLUT< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
	LUT class for storing mappings between allele vectors in the merged file and input VCF files Since the #alleles per site is expected to be small, this class sets the number of fields to 10. This makes any subsequent re-allocations unlikely. The function resize_luts_if_needed() will almost always return immediately after failing the if condition. More...

Namespaces
	gamgee
	gamgee::utils
	utility functions for the gamgee library

Typedefs
using	gamgee::utils::CombineAllelesLUT = MergedVCFAllelesIdxLUT< true, true >

Functions
template<bool inputs_2_merged_LUT_is_input_ordered, bool merged_2_inputs_LUT_is_input_ordered>
void	test_lut_base ()

Function Documentation

template<bool inputs_2_merged_LUT_is_input_ordered, bool merged_2_inputs_LUT_is_input_ordered>

void test_lut_base

(

)