cram_samtools.c File Reference

#include <assert.h>
#include <string.h>
#include <stdlib.h>
#include "cram/cram.h"
#include "htslib/sam.h"

Functions
int	bam_construct_seq (bam_seq_t **bp, size_t extra_len, const char *qname, size_t qname_len, int flag, int rname, int pos, int end, int mapq, uint32_t ncigar, const uint32_t *cigar, int mrnm, int mpos, int isize, int len, const char *seq, const char *qual)
bam_hdr_t *	cram_header_to_bam (SAM_hdr *h)
SAM_hdr *	bam_header_to_cram (bam_hdr_t *h)

Function Documentation

int bam_construct_seq	(	bam_seq_t **	bp,
		size_t	extra_len,
		const char *	qname,
		size_t	qname_len,
		int	flag,
		int	rname,
		int	pos,
		int	end,
		int	mapq,
		uint32_t	ncigar,
		const uint32_t *	cigar,
		int	mrnm,
		int	mpos,
		int	isize,
		int	len,
		const char *	seq,
		const char *	qual
	)

SAM_hdr* bam_header_to_cram

(

bam_hdr_t *

h

)

bam_hdr_t* cram_header_to_bam

(

SAM_hdr *

h

)