cram_index.c File Reference

#include <stdio.h>
#include <errno.h>
#include <assert.h>
#include <stdlib.h>
#include <string.h>
#include <zlib.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <math.h>
#include <ctype.h>
#include "htslib/hfile.h"
#include "cram/cram.h"
#include "cram/os.h"
#include "cram/zfio.h"

Functions
int	cram_index_load (cram_fd *fd, const char *fn)
void	cram_index_free (cram_fd *fd)
cram_index *	cram_index_query (cram_fd *fd, int refid, int pos, cram_index *from)
int	cram_seek_to_refpos (cram_fd *fd, cram_range *r)
int	cram_index_build (cram_fd *fd, const char *fn_base)

Function Documentation

int cram_index_build	(	cram_fd *	fd,
		const char *	fn_base
	)

void cram_index_free

(

cram_fd *

fd

)

int cram_index_load	(	cram_fd *	fd,
		const char *	fn
	)

cram_index* cram_index_query	(	cram_fd *	fd,
		int	refid,
		int	pos,
		cram_index *	from
	)

int cram_seek_to_refpos	(	cram_fd *	fd,
		cram_range *	r
	)