SplitMultiSampleVCF

SplitMultiSampleVCF

description
Split a multi-sample VCF into individual compressed VCF files, one per sample, with corresponding index files.
author
Jonn Smith

Inputs

Required

  • input_vcf (File, required): Multi-sample VCF file (can be compressed or uncompressed)

Optional

  • input_vcf_index (File?): Index file for the input VCF (required if VCF is compressed)
  • SplitMultiSampleVCFTask.runtime_attr_override (RuntimeAttr?)

Defaults

  • num_samples (Int, default=100): Number of samples in the input VCF (optional; default: 100)

Outputs

  • sample_vcfs (Array[File])
  • sample_vcf_indices (Array[File])

Dot Diagram

SplitMultiSampleVCF