SRBamToFq

SRBamToFq

Inputs

Required

  • bam (File, required)
  • gcs_out_root_dir (String, required)
  • participant_name (String, required)

Optional

  • BamToFq.runtime_attr_override (RuntimeAttr?)
  • FinalizeFqEnd1.keyfile (File?)
  • FinalizeFqEnd1.name (String?)
  • FinalizeFqEnd1.runtime_attr_override (RuntimeAttr?)
  • FinalizeFqEnd2.keyfile (File?)
  • FinalizeFqEnd2.name (String?)
  • FinalizeFqEnd2.runtime_attr_override (RuntimeAttr?)
  • FinalizeFqUnpaired.keyfile (File?)
  • FinalizeFqUnpaired.name (String?)
  • FinalizeFqUnpaired.runtime_attr_override (RuntimeAttr?)

Outputs

  • fq_end1 (File)
  • fq_end2 (File)
  • fq_unpaired (File)

Dot Diagram

SRBamToFq