SRBamToFq

SRBamToFq

Inputs

Required

• bam (File, required)
• participant_name (String, required)

Optional

• bam_index (File?)
• gcs_out_root_dir (String?)
• reference_dict (File?)
• reference_fasta (File?)
• reference_fasta_index (File?)
• BamToFq.runtime_attr_override (RuntimeAttr?)
• FinalizeFqEnd1.keyfile (File?)
• FinalizeFqEnd1.name (String?)
• FinalizeFqEnd1.runtime_attr_override (RuntimeAttr?)
• FinalizeFqEnd2.keyfile (File?)
• FinalizeFqEnd2.name (String?)
• FinalizeFqEnd2.runtime_attr_override (RuntimeAttr?)
• FinalizeFqUnpaired.keyfile (File?)
• FinalizeFqUnpaired.name (String?)
• FinalizeFqUnpaired.runtime_attr_override (RuntimeAttr?)

Outputs

• fq_end1 (File)
• fq_end2 (File)
• fq_unpaired (File)

Dot Diagram