PfalciparumDrugResistanceSummary

PfalciparumDrugResistanceSummary

desciption

Create a drug resistance report based on the given raw drug resistance loci report.

Inputs

Required

• participant_name (String, required): Participant (or sample) name for the given bam file.
• raw_drug_resistance_info (File, required)

Optional

• gcs_out_root_dir (String?): GCS Bucket into which to finalize outputs. If no bucket is given, outputs will not be finalized and instead will remain in their native execution location.
• CreateDrugResistanceSummary.runtime_attr_override (RuntimeAttr?)
• FinalizeDrugResistanceSummary.keyfile (File?)
• FinalizeDrugResistanceSummary.name (String?)
• FinalizeDrugResistanceSummary.runtime_attr_override (RuntimeAttr?)

Outputs

• drug_resistance_summary (File)
• predicted_chloroquine_status (String)
• predicted_pyrimethamine_status (String)
• predicted_sulfadoxine_status (String)
• predicted_mefloquine_status (String)
• predicted_artemisinin_status (String)
• predicted_piperaquine_status (String)

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