PBMASIsoSeqDemultiplex

PBMASIsoSeqDemultiplex

description
Demultiplex a BAM file based on the UMI tag

Inputs

Required

  • bam (File, required): GCS path to BAM file
  • gcs_out_root_dir (String, required): GCS bucket to store the demultiplexed BAMs
  • participant_name (String, required): name of the participant from whom these samples were obtained

Optional

  • Demultiplex.runtime_attr_override (RuntimeAttr?)
  • FinalizeBai.keyfile (File?)
  • FinalizeBai.runtime_attr_override (RuntimeAttr?)
  • FinalizeBam.keyfile (File?)
  • FinalizeBam.runtime_attr_override (RuntimeAttr?)
  • FinalizePbi.keyfile (File?)
  • FinalizePbi.runtime_attr_override (RuntimeAttr?)
  • Index.runtime_attr_override (RuntimeAttr?)
  • PBIndex.runtime_attr_override (RuntimeAttr?)

Defaults

  • tag (String, default="CB"): BAM tag on which to demultiplex

Outputs

  • demuxed_bams (Array[File])
  • demuxed_bais (Array[File])
  • demuxed_pbis (Array[File])

Dot Diagram

PBMASIsoSeqDemultiplex