ExpandedDrugResistanceMarkerAggregation

ExpandedDrugResistanceMarkerAggregation

author
Jonn Smith
description
Combine multiple expanded drug resistance marker reports together for a set of samples.

Inputs

Required

  • dir_prefix (String, required): Directory prefix to use for finalized location.
  • expanded_drug_res_markers (Array[File], required): Array of per-sample drug resistance marker reports to aggregate.
  • gcs_out_root_dir (String, required): GCS Bucket into which to finalize outputs.
  • out_file_prefix (String, required): Prefix to use for output files.
  • sample_names (Array[String], required): Array of sample names corresponding to each file in expanded_drug_res_markers.

Optional

  • CombineExpandedDrugResistanceMarkers.runtime_attr_override (RuntimeAttr?)
  • FinalizeDRReportAllMarkers.keyfile (File?)
  • FinalizeDRReportAllMarkers.name (String?)
  • FinalizeDRReportAllMarkers.runtime_attr_override (RuntimeAttr?)

Outputs

  • combined_expanded_markers (File)

Dot Diagram

ExpandedDrugResistanceMarkerAggregation