DeepTrio

DeepTrio

Inputs

Required

  • parent1_bai (File, required)
  • parent1_bam (File, required)
  • parent1_sample_id (String, required)
  • parent2_bai (File, required)
  • parent2_bam (File, required)
  • parent2_sample_id (String, required)
  • proband_bai (File, required)
  • proband_bam (File, required)
  • proband_sample_id (String, required)
  • ref_fasta (File, required)
  • ref_fasta_dict (File, required)
  • ref_fasta_fai (File, required)

Optional

  • t_001_DeepTrio.runtime_attr_override (RuntimeAttr?)

Defaults

  • model_type (String, default="WGS")

Outputs

  • parent1_vcf (File)
  • parent1_vcf_index (File)
  • parent1_gvcf (File)
  • parent1_gvcf_index (File)
  • parent2_vcf (File)
  • parent2_vcf_index (File)
  • parent2_gvcf (File)
  • parent2_gvcf_index (File)
  • proband_vcf (File)
  • proband_vcf_index (File)
  • proband_gvcf (File)
  • proband_gvcf_index (File)
  • logs (File)

Dot Diagram

DeepTrio