ConvertToZarrStore

ConvertToZarrStore

description
A workflow that converts a joint-called VCF to a Zarr store.

Inputs

Required

  • joint_vcf (File, required)
  • joint_vcf_tbi (File, required): VCF Index for vcf.
  • prefix (String, required): prefix for output Zarr store

Optional

  • gcs_out_root_dir (String?): GCS Bucket into which to finalize outputs. If no bucket is given, outputs will not be finalized and instead will remain in their native execution location.
  • FinalizeOutputs.keyfile (File?)
  • FinalizeOutputs.name (String?)
  • FinalizeOutputs.runtime_attr_override (RuntimeAttr?)
  • PerformZarrStoreConversion.ref_fai (String?)
  • PerformZarrStoreConversion.ref_fasta (String?)
  • PerformZarrStoreConversion.runtime_attr_override (RuntimeAttr?)

Defaults

  • PerformZarrStoreConversion.num_cpus (Int, default=4)
  • PerformZarrStoreConversion.reference (String, default="GRCh38")

Outputs

  • joint_zarr (File)

Dot Diagram

ConvertToZarrStore