ConvertToHailMT

ConvertToHailMT

description

Convert a gVCF to a Hail MatrixTable

Inputs

Required

• gcs_out_root_dir (String, required): GCS bucket in which to store the Hail MatrixTable
• joint_gvcf (File, required): joint-called gVCF file
• joint_gvcf_tbi (File, required): .tbi index for joint-called gVCF file
• prefix (String, required): prefix for output Hail MatrixTable

Optional

• FinalizeMT.keyfile (File?)
• FinalizeMT.name (String?)
• FinalizeMT.runtime_attr_override (RuntimeAttr?)
• RunConvertToHailMT.ref_fai (String?)
• RunConvertToHailMT.ref_fasta (String?)
• RunConvertToHailMT.runtime_attr_override (RuntimeAttr?)

Defaults

• RunConvertToHailMT.reference (String, default="GRCh38")

Outputs

• joint_mt (String)

Dot Diagram