CollectSMRTCellUnalignedMetrics

CollectSMRTCellUnalignedMetrics

description
Collects metrics from a SMRT Cell unaligned BAM file

Inputs

Required

  • smrtcell_pbi (File, required): SMRT Cell PBI file

Defaults

  • SummarizePBI.qual_threshold (Int, default=0)

Outputs

  • pbi_summary (File)
  • polymerase_read_length_mean (Float)
  • polymerase_read_length_N50 (Float)
  • subread_read_length_mean (Float)
  • subread_read_length_N50 (Float)
  • num_reads (Float)
  • num_bases (Float)
  • read_length_mean (Float)
  • read_length_median (Float)
  • read_length_stdev (Float)
  • read_length_N50 (Float)
  • read_qual_mean (Float)
  • read_qual_median (Float)

Dot Diagram

CollectSMRTCellUnalignedMetrics