CallAssemblyVariants

CallAssemblyVariants

description

Call variants from an assembly using paftools.js

Inputs

Required

• asm_fasta (File, required): haploid assembly
• participant_name (String, required): participant name
• prefix (String, required): prefix for output files
• ref_fasta (File, required): reference to which assembly should be aligned

Optional

• AlignAsPAF.runtime_attr_override (RuntimeAttr?)
• Paftools.runtime_attr_override (RuntimeAttr?)

Outputs

• paf (File)
• paftools_vcf (File)

Dot Diagram