SGKit

ConvertToZarrStore

description

Convert a .vcf.bgz file to a Zarr store and copy it to a final gs:// URL.

Inputs

Required

• tbi (File, required)
• vcf (File, required)

Optional

• ref_fai (String?)
• ref_fasta (String?)
• runtime_attr_override (RuntimeAttr?)

Defaults

• num_cpus (Int, default=4)
• prefix (String, default="out")
• reference (String, default="GRCh38")

Outputs

• zarr (File)