Quast

Quast

description
A task that runs QUAST to evaluate a given set of assemblies on a species with existing reference assembly. Entire Quast output will be tarballed

Inputs

Required

  • assemblies (Array[File], required): list of assemblies to evaluate

Optional

  • ref (File?): reference assembly of the species
  • runtime_attr_override (RuntimeAttr?)

Defaults

  • is_large (Boolean, default=false)

Outputs

  • report_txt (File)
  • report_html (File)
  • report_in_various_formats (Array[File])
  • plots (Array[File])
  • contigs_reports (File?)

SummarizeQuastReport

description
A task that summarizes the QUAST report into a single tab-delimited file

Inputs

Required

  • quast_report_txt (File, required): the QUAST report file

Outputs

  • quast_metrics_together (File)
  • quast_metrics (Array[File])