NanoPlot

NanoPlotFromSummary

description
Use NanoPlot to generate plots from ONT summary files

Inputs

Required

  • summary_files (Array[File], required): A list of summary files to use as input

Optional

  • runtime_attr_override (RuntimeAttr?): Override the default runtime attributes

Outputs

  • stats (File)
  • stats_map (Map[String,Float])
  • plots (Array[File])
  • ActivePores_Over_Time (File)
  • ActivityMap_ReadsPerChannel (File)
  • CumulativeYieldPlot_Gigabases (File)
  • CumulativeYieldPlot_NumberOfReads (File)
  • LengthvsQualityScatterPlot_dot (File)
  • LengthvsQualityScatterPlot_kde (File)
  • Non_weightedHistogramReadlength (File)
  • Non_weightedLogTransformed_HistogramReadlength (File)
  • NumberOfReads_Over_Time (File)
  • TimeLengthViolinPlot (File)
  • TimeQualityViolinPlot (File)
  • WeightedHistogramReadlength (File)
  • WeightedLogTransformed_HistogramReadlength (File)
  • Yield_By_Length (File)

NanoPlotFromRichFastqs

description
Use NanoPlot to generate plots from a list of ONT fastq files

Inputs

Required

  • fastqs (Array[File], required): A list of fastq files to use as input

Optional

  • runtime_attr_override (RuntimeAttr?): Override the default runtime attributes

Outputs

  • stats (File)
  • stats_map (Map[String,Float])
  • plots (Array[File])
  • ActivePores_Over_Time (File)
  • ActivityMap_ReadsPerChannel (File)
  • CumulativeYieldPlot_Gigabases (File)
  • CumulativeYieldPlot_NumberOfReads (File)
  • LengthvsQualityScatterPlot_dot (File)
  • LengthvsQualityScatterPlot_kde (File)
  • Non_weightedHistogramReadlength (File)
  • Non_weightedLogTransformed_HistogramReadlength (File)
  • NumberOfReads_Over_Time (File)
  • TimeLengthViolinPlot (File)
  • TimeQualityViolinPlot (File)
  • WeightedHistogramReadlength (File)
  • WeightedLogTransformed_HistogramReadlength (File)
  • Yield_By_Length (File)

NanoPlotFromBam

description
Use NanoPlot to generate plots from a bam file

Inputs

Required

  • bai (File, required): The bai file for the bam file
  • bam (File, required): A bam file to use as input

Optional

  • runtime_attr_override (RuntimeAttr?): Override the default runtime attributes

Outputs

  • stats (File)
  • stats_map (Map[String,Float])
  • plots (Array[File])