MalariaReportsSnapshots

DrugResIGV

description
DrugResIGV generates IGV snapshots for the different drug resistance loci for malaria.

Inputs

Required

  • aligned_bai (File, required): GCS path to aligned bai
  • aligned_bam (File, required): GCS path to aligned bam
  • fasta_index_path (File, required): GCS path to fasta.fai file
  • fasta_path (File, required): GCS path to fasta file
  • regions_bed (File, required): GCS path to bed file containing drug resistance loci
  • sample_name (String, required): name of the sample sequenced

Optional

  • runtime_attr_override (RuntimeAttr?): Override the default runtime attributes

Outputs

  • snapshots (Array[File])
  • batch_script (File)