BroadOnPremMalariaPipelineTasks

VariantRecalibrator

Inputs

Required

• input_vcf (File, required)
• prefix (String, required)
• reference_dict (File, required)
• reference_fai (File, required)
• reference_fasta (File, required)
• resource_vcf_3d7_hb3 (File, required)
• resource_vcf_3d7_hb3_index (File, required)
• resource_vcf_7g8_gb4 (File, required)
• resource_vcf_7g8_gb4_index (File, required)
• resource_vcf_hb3_dd2 (File, required)
• resource_vcf_hb3_dd2_index (File, required)

Optional

• runtime_attr_override (RuntimeAttr?)

Outputs

• vcf (File)

SortCompressIndexVcf

Inputs

Required

• input_vcf (File, required)

Optional

• runtime_attr_override (RuntimeAttr?)

Outputs

• vcf (File)
• vcf_index (File)