{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Available genes\n", "\n", "Is my gene of interest in JUMP or other associated tables?" ], "id": "107ab9df-d75f-404c-a684-8ccdf5219ffa" }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "output_type": "display_data", "metadata": {}, "data": { "text/html": [ "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "\n", "\n", "
GenecrisprorfA549HeLa_DMEMHeLa_HPLMLacoste
\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "\n", " \n", " \n", " \n", " \n", "\n", " \n", " \n", " \n", " \n", "\n", " \n", " \n", " \n", " \n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", "\n", "\n", "Loading ITables v2.2.5 from the internet...\n", "(need help?)
\n", "\n", "" ] } } ], "source": [ "import requests\n", "\n", "import polars as pl\n", "import pooch\n", "from itables import show\n", "\n", "logger = pooch.get_logger()\n", "logger.setLevel(\"WARNING\")\n", "df = pl.read_csv(\n", " pooch.retrieve(\n", " f\"https://zenodo.org/api/records/15065576/files/table.csv/content\",\n", " known_hash=\"db79d8316dec141802ffad6378ae7ff05921c22551feda6feed117c236315ebd\",\n", " )\n", ")\n", "show(df, maxBytes=0)" ], "id": "fbf14d36" } ], "nbformat": 4, "nbformat_minor": 5, "metadata": { "jupytext": { "executable": "/usr/bin/env jupyter", "text_representation": { "extension": ".qmd", "format_name": "quarto", "format_version": "1.0", "jupytext_version": "1.16.4" } }, "kernelspec": { "name": "python3", "display_name": "Python 3", "language": "python" }, "language_info": { "name": "python", "codemirror_mode": { "name": "ipython", "version": "3" }, "file_extension": ".py", "mimetype": "text/x-python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.11.9" } } }